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de novo motif discovery

Bioconductor version: 2.14

rGADEM is an efficient de novo motif discovery tool for large-scale genomic sequence data. It is an open-source R package, which is based on the GADEM software.

Author: Arnaud Droit, Raphael Gottardo, Gordon Robertson and Leiping Li

Maintainer: Arnaud Droit <arnaud.droit at>

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biocViews ChIPSeq, ChIPchip, GenomicSequence, Microarray, MotifDiscovery, Sequencing, Software
Version 2.12.0
In Bioconductor since BioC 2.6 (R-2.11)
License Artistic-2.0
Depends R (>= 2.11.0), Biostrings, IRanges, BSgenome, methods, seqLogo
Imports Biostrings, IRanges, methods, graphics, seqLogo
Suggests BSgenome.Hsapiens.UCSC.hg18
System Requirements
Depends On Me
Imports Me MotIV
Suggests Me

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Package Source rGADEM_2.12.0.tar.gz
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Mac OS X 10.6 (Snow Leopard) rGADEM_2.12.0.tgz
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