To install this package, start R and enter:


In most cases, you don't need to download the package archive at all.


graph: A package to handle graph data structures

Bioconductor version: 2.14

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("graph")):


To install this package, start R and enter:



To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Attributes for Graph Objects
PDF R Script clusterGraph and distGraph
PDF R Script Graph
PDF R Script Graph Design
PDF R Script graphBAM and MultiGraph classes
PDF   Reference Manual


biocViews GraphAndNetwork, Software
Version 1.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier
License Artistic-2.0
Depends R (>= 2.10), methods
Imports methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
Depends On Me apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, nem, netresponse, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO
Suggests Me AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, mmnet, MmPalateMiRNA, rBiopaxParser, rTRM, SPIA, VariantTools

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source graph_1.42.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) graph_1.42.0.tgz
Mac OS X 10.9 (Mavericks) graph_1.42.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center