To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")

In most cases, you don't need to download the package archive at all.

graph

graph: A package to handle graph data structures

Bioconductor version: 2.14

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("graph")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

PDF	R Script	Attributes for Graph Objects
PDF	R Script	clusterGraph and distGraph
PDF	R Script	Graph
PDF	R Script	Graph Design
PDF	R Script	graphBAM and MultiGraph classes
PDF		Reference Manual

biocViews	GraphAndNetwork, Software
Version	1.42.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	Artistic-2.0
Depends	R (>= 2.10), methods
Imports	methods, stats, stats4, tools, utils, BiocGenerics(>= 0.1.11)
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
System Requirements
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, flowClust, flowMerge, gaggle, gaucho, GeneNetworkBuilder, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, KEGGgraph, keggorthology, maigesPack, MineICA, NCIgraph, nem, netresponse, NetSAM, pathRender, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, Rtreemix, SNAData, SRAdb, topGO, vtpnet, yeastExpData
Imports Me	BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, DEGraph, flowCore, flowUtils, flowWorkspace, flowWorkspace, gage, GeneNetworkBuilder, GOFunction, GOSim, GOstats, GraphAT, graphite, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, NCIgraph, nem, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, rsbml, Rtreemix, SplicingGraphs, Streamer, topGO
Suggests Me	AnnotationDbi, BiocCaseStudies, Category, DEGraph, EBcoexpress, ecolitk, GeneAnswers, gwascat, mmnet, MmPalateMiRNA, rBiopaxParser, rTRM, SPIA, VariantTools

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