To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pathRender")

In most cases, you don't need to download the package archive at all.

pathRender

Render molecular pathways

Bioconductor version: 2.14

build graphs from pathway databases, render them by Rgraphviz

Author: Li Long <lilong at isb-sib.ch>

Maintainer: Li Long <lilong at isb-sib.ch>

Citation (from within R, enter citation("pathRender")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pathRender")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pathRender")

 

PDF R Script pathRender overview
PDF R Script pathway graphs colored by expression map
PDF   Reference Manual
Text   NEWS

Details

biocViews GraphAndNetwork, Pathways, Software, Visualization
Version 1.32.0
In Bioconductor since BioC 1.8 (R-2.3)
License LGPL
Depends graph, Rgraphviz, RColorBrewer, cMAP, AnnotationDbi, methods
Imports
Suggests ALL, hgu95av2.db
System Requirements
URL http://www.bioconductor.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pathRender_1.32.0.tar.gz
Windows Binary pathRender_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pathRender_1.32.0.tgz
Mac OS X 10.9 (Mavericks) pathRender_1.32.0.tgz
Browse/checkout source (username/password: readonly)
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