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Identification of transcriptional regulatory modules from PPI networks

Bioconductor version: 2.14

rTRM identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

Author: Diego Diez

Maintainer: Diego Diez <diego10ruiz at>

Citation (from within R, enter citation("rTRM")):


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PDF R Script Introduction to rTRM
PDF   Reference Manual
Text   NEWS


biocViews GeneRegulation, GraphAndNetwork, Network, Software, Transcription
Version 1.2.0
In Bioconductor since BioC 2.13 (R-3.0)
License GPL-3
Depends R (>= 2.10), igraph (>= 0.7), RSQLite
Imports AnnotationDbi
Suggests RUnit, BiocGenerics, MotifDb, graph, PWMEnrich, biomaRt, knitr, Biostrings, BSgenome.Mmusculus.UCSC.mm8.masked,,, ggplot2
System Requirements
Depends On Me
Imports Me rTRMui
Suggests Me

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Package Source rTRM_1.2.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) rTRM_1.2.0.tgz
Mac OS X 10.9 (Mavericks) rTRM_1.2.0.tgz
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