source("http://bioconductor.org/biocLite.R")
biocLite("globaltest")

globaltest

Testing groups of covariates/features for association with a response variable, with applications to gene set testing

Bioconductor version: 2.13

The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.

Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari

Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("globaltest")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("globaltest")

 

PDF	R Script	Global Test
PDF		Reference Manual

Details

biocViews	Bioinformatics, DifferentialExpression, GO, Microarray, OneChannel, Pathways, Software
Version	5.16.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends	methods
Imports	Biobase, survival, AnnotationDbi, annotate, multtest, graphics
Suggests	vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase, survival, GSEABase, penalized, gss, MASS, boot, rpart
System Requirements
URL	http://www.msbi.nl/goeman
Depends On Me	GlobalAncova
Imports Me	BiSeq, SIM
Suggests Me	topGO

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	globaltest_5.16.0.tar.gz
Windows Binary	globaltest_5.16.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	globaltest_5.16.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats