source("http://bioconductor.org/biocLite.R")
biocLite("marray")

marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.13

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("marray")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("marray")

 

PDF		ExampleHTML.pdf
PDF	R Script	marray Normalization
PDF	R Script	marray Overview
PDF	R Script	marrayClasses Overview
PDF	R Script	marrayClasses Tutorial (short)
PDF	R Script	marrayInput Introduction
PDF	R Script	marrayPlots Overview
PDF		widget1.pdf
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Microarray, Preprocessing, Software, TwoChannel
Version	1.40.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	LGPL
Depends	R (>= 2.10.0), limma, methods
Imports
Suggests	tkWidgets
System Requirements
URL	http://www.maths.usyd.edu.au/u/jeany/
Depends On Me	beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, MineICA, nnNorm, OLIN, stepNorm, TurboNorm
Imports Me	arrayQuality, ChAMP, MSstats, nnNorm, OLIN, OLINgui, piano, plrs, sigaR, stepNorm, timecourse
Suggests Me	Agi4x44PreProcess, AgiMicroRna, DEGraph, Mfuzz

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	marray_1.40.0.tar.gz
Windows Binary	marray_1.40.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	marray_1.40.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats