source("http://bioconductor.org/biocLite.R")
biocLite("piano")

piano

Platform for integrative analysis of omics data

Bioconductor version: 2.13

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("piano")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("piano")

 

PDF	R Script	Piano - Platform for Integrative Analysis of Omics data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization
Version	1.2.12
In Bioconductor since	BioC 2.12 (R-3.0)
License	GPL (>=2)
Depends	R (>= 2.14.0)
Imports	Biobase, gplots, igraph, relations, marray
Suggests	yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall
System Requirements
URL	http://www.sysbio.se/piano
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	piano_1.2.12.tar.gz
Windows Binary	piano_1.2.12.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	piano_1.2.12.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats