snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Release (2.12)

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpStats")

To cite this package in a publication, start R and enter:

    citation("snpStats")

PDF	R Script	Data input
PDF	R Script	Imputation and meta-analysis
PDF	R Script	LD statistics
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpStats introduction
PDF	R Script	TDT tests
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Version	1.10.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends	R(>= 2.10.0), survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix, BiocGenerics
Suggests	hexbin
System Requirements
URL
Depends On Me	GGBase, GGdata, ggtut, gwascat
Imports Me	FunciSNP, GGtools
Suggests Me	crlmm, GWASTools, VariantAnnotation

Common Bioconductor workflows include:

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