ggtut
support for tutorial on genetics of gene expression ISMB 2011
Bioconductor version: 2.10
various resources for genetics of expression with R/bioc
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ggtut")
To cite this package in a publication, start R and enter:
citation("ggtut")
Documentation
| R Script | careyGGtutslides.pdf | |
| R Script | extras.pdf | |
| R Script | tut11.pdf | |
| R Script | tut12.pdf | |
| Reference Manual |
Details
| biocViews | ExperimentData |
| Depends | R (>= 2.14.0), GGtools(>= 3.11.32), ff, GenomicRanges, snpStats, GGdata, GenomicFeatures, ChIPpeakAnno, Rsamtools(>= 1.5.35), cheung2010, SNPlocs.Hsapiens.dbSNP.20090506, hmyriB36 |
| Imports | |
| Suggests | rtracklayer, GenomicFeatures, ChIPpeakAnno, TxDb.Hsapiens.UCSC.hg18.knownGene |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 0.0.42 |
Package Downloads
| Package Source | ggtut_0.0.42.tar.gz |
| Windows Binary | ggtut_0.0.42.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | ggtut_0.0.42.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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