snpStats

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.10

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <david.clayton at cimr.cam.ac.uk>

Maintainer: David Clayton <david.clayton at cimr.cam.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snpStats")

To cite this package in a publication, start R and enter:

    citation("snpStats")

PDF	R Script	Data input
PDF	R Script	Imputation and meta-analysis
PDF	R Script	LD statistics
PDF	R Script	Principal components analysis
PDF	R Script	snpMatrix-differences
PDF	R Script	snpStats introduction
PDF	R Script	TDT tests
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, SNP, Software
Depends	R(>= 2.10.0), survival, methods, Matrix
Imports	graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests	hexbin
System Requirements
License	GPL-3
URL	http://www-gene.cimr.cam.ac.uk/clayton
Depends On Me	GGBase, GGdata, ggtut, gwascat
Imports Me	GGtools, VariantAnnotation
Suggests Me	crlmm
Version	1.6.0
Since	Bioconductor 2.8 (R-2.13)

Common Bioconductor workflows include:

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