cheung2010

resources for genetics of gene expression based on Cheung et al 2010

Bioconductor version: 2.10

Data resources related to the PLoS Biology paper Polymorphic Cis- and Trans-Regulation of Human Gene Expression, including small-footprint smlSet support for 147 hgfocus arrays and corresponding HapMap genotypes at 1.3 million SNP; 0.0.22+ includes cheung_eset... from Leek et al RECOUNT myrna output

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: Vince Carey <stvjc at channing.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("cheung2010")

To cite this package in a publication, start R and enter:

    citation("cheung2010")

Documentation

PDF	R Script	arr2hap.pdf
PDF	R Script	cheungTrans: checking trans eQTL with hgfocus arrays
PDF		Reference Manual

Details

biocViews	ExperimentData, GeneticVariability, RNAseqData
Depends	R (>= 2.13.0), Biobase, GGtools, GenomicRanges, hgfocus.db
Imports	AnnotationDbi
Suggests	SNPlocs.Hsapiens.dbSNP.20100427, SNPlocs.Hsapiens.dbSNP.20101109,
System Requirements
License	Artistic 2.0
URL
Depends On Me	ggtut
Imports Me
Suggests Me
Version	0.0.25

Package Downloads

Package Source	cheung2010_0.0.25.tar.gz
Windows Binary	cheung2010_0.0.25.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	cheung2010_0.0.25.tgz
Package Downloads Report	Download Stats

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