SNPlocs.Hsapiens.dbSNP.20090506

SNP locations for Homo sapiens (dbSNP BUILD 130)

Bioconductor version: 2.10

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP BUILD 130. The source data files used for this package were created by NCBI on 5-6 May 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

To cite this package in a publication, start R and enter:

    citation("SNPlocs.Hsapiens.dbSNP.20090506")

Documentation


PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens
Depends	R (>= 2.10), IRanges, GenomicRanges
Imports	methods, IRanges, GenomicRanges
Suggests	Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg18
System Requirements
License	Artistic-2.0
URL
Depends On Me	ggtut
Imports Me
Suggests Me	ind1KG
Version	0.99.6

Package Downloads

Package Source	SNPlocs.Hsapiens.dbSNP.20090506_0.99.6.tar.gz
Windows Binary	SNPlocs.Hsapiens.dbSNP.20090506_0.99.6.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	SNPlocs.Hsapiens.dbSNP.20090506_0.99.6.tgz
Package Downloads Report	Download Stats

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