statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.10

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to clusterProfiler
PDF R Script clusterProfiler_for_unsupported_organism.pdf
PDF R Script omics2012.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Clustering, GO, MultipleComparisons, Pathways, Software, Visualization
Depends R (>= 2.10)
Imports methods, stats4, ggplot2, DBI, plyr, AnnotationDbi, GO.db, KEGG.db,, DOSE
Suggests GOSemSim, ReactomePA
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me DOSE, GOSemSim, ReactomePA
Version 1.4.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source clusterProfiler_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary clusterProfiler_1.4.0.tgz
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Fred Hutchinson Cancer Research Center