GO-terms Semantic Similarity Measures

Bioconductor version: 2.10

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for estimating GO semantic similarities. Support many species, including Anopheles, Arabidopsis, Bovine, Canine, Chicken, Chimp, Coelicolor, E coli strain K12 and Sakai, Fly, Human, Malaria, Mouse, Pig, Rhesus, Rat, Worm, Xenopus, Yeast, and Zebrafish.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to GOSemSim
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Clustering, GO, Pathways, Software
Depends R (>= 2.10)
Imports methods, AnnotationDbi, GO.db, org.Hs.eg.db
Suggests DOSE, clusterProfiler
System Requirements
License GPL-2
URL http://bioinformatics.oxfordjournals.org/content/26/7/976.full
Depends On Me
Imports Me
Suggests Me clusterProfiler, DOSE, ReactomePA
Version 1.14.0
Since Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source GOSemSim_1.14.0.tar.gz
Windows Binary GOSemSim_1.14.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary GOSemSim_1.14.0.tgz
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Fred Hutchinson Cancer Research Center