Reactome Pathway Analysis

Bioconductor version: 2.10

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at>

Maintainer: Guangchuang Yu <guangchuangyu at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to ReactomePA
PDF R Script cnetplot.pdf
PDF R Script rPAclusterProfiler.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Pathways, Software, Visualization
Imports methods, AnnotationDbi, reactome.db, stats4, plyr, igraph0, qvalue, graphics,
Suggests clusterProfiler, DOSE, GOSemSim
System Requirements
License GPL-2
Depends On Me
Imports Me
Suggests Me clusterProfiler, DOSE
Version 1.0.1
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source ReactomePA_1.0.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary ReactomePA_1.0.1.tgz
Package Downloads Report Download Stats

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