DOI: 10.18129/B9.bioc.regionReport    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see regionReport.

Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Bioconductor version: 3.8

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at>

Citation (from within R, enter citation("regionReport")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Basic genomic regions exploration
HTML R Script Example report using bumphunter results
HTML R Script Introduction to regionReport
PDF   Reference Manual
Text   NEWS


biocViews Coverage, DifferentialExpression, DifferentialMethylation, DifferentialPeakCalling, ImmunoOncology, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version 1.16.1
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Depends R (>= 3.2)
Imports BiocStyle(>= 2.5.19), derfinder(>= 1.1.0), DEFormats, DESeq2, GenomeInfoDb, GenomicRanges, knitcitations (>= 1.0.1), knitr (>= 1.6), knitrBootstrap (>= 0.9.0), methods, RefManageR, rmarkdown (>= 0.9.5), S4Vectors, SummarizedExperiment
Suggests BiocManager, biovizBase, bumphunter(>= 1.7.6), derfinderPlot(>= 1.3.2), sessioninfo, DT, DESeq, edgeR, ggbio(>= 1.13.13), ggplot2, grid, gridExtra, IRanges, mgcv, pasilla, pheatmap, RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene, whisker
Depends On Me
Imports Me recountWorkflow
Suggests Me recount
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package regionReport_1.16.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) regionReport_1.16.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: