DOI: 10.18129/B9.bioc.derfinderPlot    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see derfinderPlot.

Plotting functions for derfinder

Bioconductor version: 3.8

This package provides plotting functions for results from the derfinder package.

Author: Leonardo Collado-Torres [aut, cre], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths]

Maintainer: Leonardo Collado-Torres <lcollado at>

Citation (from within R, enter citation("derfinderPlot")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software, Visualization
Version 1.16.1
In Bioconductor since BioC 3.0 (R-3.1) (4.5 years)
License Artistic-2.0
Depends R (>= 3.2)
Imports derfinder(>= 1.1.0), GenomeInfoDb(>= 1.3.3), GenomicFeatures, GenomicRanges(>= 1.17.40), ggbio(>= 1.13.13), ggplot2, graphics, grDevices, IRanges(>= 1.99.28), limma, methods, plyr, RColorBrewer, RefManageR, reshape2, S4Vectors(>= 0.9.38), scales, utils
Suggests biovizBase(>= 1.27.2), bumphunter(>= 1.7.6), derfinderData(>= 0.99.0), sessioninfo, knitcitations (>= 1.0.1), knitr (>= 1.6), BiocStyle(>= 2.5.19),, rmarkdown (>= 0.3.3), testthat, TxDb.Hsapiens.UCSC.hg19.knownGene
Depends On Me
Imports Me recountWorkflow
Suggests Me derfinder, regionReport
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package derfinderPlot_1.16.1.tar.gz
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Mac OS X 10.11 (El Capitan) derfinderPlot_1.16.1.tgz
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