DOI: 10.18129/B9.bioc.phenoTest    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see phenoTest.

Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.

Bioconductor version: 3.8

Tools to test correlation between gene expression and phenotype in a way that is efficient, structured, fast and scalable. GSEA is also provided.

Author: Evarist Planet

Maintainer: Evarist Planet <evarist.planet at>

Citation (from within R, enter citation("phenoTest")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Manual for the phenoTest library
PDF   Reference Manual


biocViews Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.30.0
In Bioconductor since BioC 2.8 (R-2.13) (8 years)
License GPL (>=2)
Depends R (>= 2.12.0), Biobase, methods, annotate, Heatplus, BMA, ggplot2
Imports survival, limma, Hmisc, gplots, Category, AnnotationDbi, hopach, biomaRt, GSEABase, genefilter, xtable, annotate, mgcv, SNPchip, hgu133a.db, HTSanalyzeR, ellipse
Suggests GSEABase, KEGG.db, GO.db
Enhances parallel,,,,,
Depends On Me
Imports Me canceR
Suggests Me
Links To Me
Build Report  

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Source Package phenoTest_1.30.0.tar.gz
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Mac OS X 10.11 (El Capitan) phenoTest_1.30.0.tgz
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