DOI: 10.18129/B9.bioc.canceR    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see canceR.

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Bioconductor version: 3.8

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at>

Citation (from within R, enter citation("canceR")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF canceR Vignette
PDF   Reference Manual
Text   NEWS


biocViews GUI, GeneExpression, Software
Version 1.16.02
In Bioconductor since BioC 3.1 (R-3.2) (4 years)
License GPL-2
Depends R (>= 3.4), tcltk, tcltk2, cgdsr
Imports GSEABase, GSEAlm, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils
Suggests testthat (>= 0.10.0), R.rsp
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package canceR_1.16.02.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) canceR_1.16.02.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: