DOI: 10.18129/B9.bioc.SNPchip    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see SNPchip.

Visualizations for copy number alterations

Bioconductor version: 3.8

Functions for plotting SNP array data; maintained for historical reasons

Author: Robert Scharpf <rscharpf at> and Ingo Ruczinski

Maintainer: Robert Scharpf <rscharpf at>

Citation (from within R, enter citation("SNPchip")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Plotting Idiograms
PDF   Reference Manual


biocViews CopyNumberVariation, GeneticVariability, SNP, Software, Visualization
Version 2.28.0
In Bioconductor since BioC 2.0 (R-2.5) (12 years)
License LGPL (>= 2)
Depends R (>= 2.14.0)
Imports methods, graphics, lattice, grid, foreach, utils, Biobase, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges, SummarizedExperiment, oligoClasses(>= 1.31.1)
Suggests crlmm(>= 1.17.14), RUnit
Enhances doSNOW, VanillaICE(>= 1.21.24), RColorBrewer
Depends On Me mBPCR
Imports Me crlmm, phenoTest
Suggests Me Category, MinimumDistance, oligoClasses, VanillaICE
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SNPchip_2.28.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) SNPchip_2.28.0.tgz
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