DOI: 10.18129/B9.bioc.scmeth    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see scmeth.

Functions to conduct quality control analysis in methylation data

Bioconductor version: 3.7

Functions to analyze methylation data can be found here. Some functions are relevant for single cell methylation data but most other functions can be used for any methylation data. Highlight of this workflow is the comprehensive quality control report.

Author: Divy Kangeyan <divyswar01 at>

Maintainer: Divy Kangeyan <divyswar01 at>

Citation (from within R, enter citation("scmeth")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script Vignette Title
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, Preprocessing, QualityControl, SingleCell, Software
Version 1.0.1
License GPL-2
Depends R (>= 3.5.0)
Imports ggplot2, knitr, rmarkdown, bsseq, AnnotationHub, GenomicRanges, reshape2, stats, utils, BSgenome, DelayedArray(>= 0.5.15), annotatr, SummarizedExperiment(>= 1.5.6), GenomeInfoDb, Biostrings, DT, ggthemes, scales, viridis, HDF5Array(>= 1.7.5)
Suggests BSgenome.Mmusculus.UCSC.mm10, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene,, Biobase, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package scmeth_1.0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) scmeth_1.0.1.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: