HDF5Array

DOI: 10.18129/B9.bioc.HDF5Array    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see HDF5Array.

HDF5 back end for DelayedArray objects

Bioconductor version: 3.7

An array-like container for convenient access and manipulation of HDF5 datasets. Supports delayed operations and block processing.

Author: Hervé Pagès

Maintainer: Hervé Pagès <hpages at fredhutch.org>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HDF5Array")

Documentation

PDF		Reference Manual

Details

biocViews	Annotation, Coverage, DataRepresentation, GenomeAnnotation, Infrastructure, Sequencing, Software
Version	1.8.1
In Bioconductor since	BioC 3.3 (R-3.3) (2.5 years)
License	Artistic-2.0
Depends	R (>= 3.4), methods, DelayedArray(>= 0.5.32), rhdf5
Imports	utils, tools, BiocGenerics(>= 0.25.1), S4Vectors, IRanges
LinkingTo
Suggests	h5vcData, SummarizedExperiment(>= 1.9.6), GenomicRanges, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me	BiocSklearn, TENxBrainData
Imports Me	beachmat, bsseq, clusterExperiment, minfi, scmeth
Suggests Me	DelayedArray, DelayedMatrixStats, DropletUtils, MultiAssayExperiment, scran, SummarizedExperiment
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HDF5Array_1.8.1.tar.gz
Windows Binary	HDF5Array_1.8.1.zip
Mac OS X 10.11 (El Capitan)	HDF5Array_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/HDF5Array
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HDF5Array
Package Short Url	http://bioconductor.org/packages/HDF5Array/
Package Downloads Report	Download Stats