DOI: 10.18129/B9.bioc.cytofkit    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see cytofkit.

cytofkit: an integrated mass cytometry data analysis pipeline

Bioconductor version: 3.7

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.

Author: Jinmiao Chen, Hao Chen, Matthew Myint

Maintainer: Jinmiao Chen <Chen_Jinmiao at>, Matthew Myint <a0124008 at>

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biocViews BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, FlowCytometry, GUI, Software
Version 1.12.0
In Bioconductor since BioC 3.1 (R-3.2) (3.5 years)
License Artistic-2.0
Depends R (>= 3.4.0), ggplot2, plyr
Imports tcltk, grDevices, graphics, utils, stats, Rtsne, e1071, flowCore, gplots, colourpicker, VGAM, reshape2, ggrepel, shiny, shinyFiles, vegan, Biobase, doParallel, parallel, pdist, methods, destiny, FlowSOM(>= 1.4.0), igraph (>= 1.1.2), RANN (>= 2.5), Rcpp (>= 0.12.0)
LinkingTo Rcpp
Suggests knitr, RUnit, testthat, BiocGenerics
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