chipenrich.data

DOI: 10.18129/B9.bioc.chipenrich.data    

Companion package to chipenrich

Bioconductor version: Release (3.6)

Supporting data for the chipenrich package. Includes pre-defined gene sets, gene locus definitions, and mappability estimates.

Author: Ryan P. Welch [aut, cph], Chee Lee [aut], Raymond G. Cavalcante [aut, cre], Laura J. Scott [ths], Maureen A. Sartor [ths]

Maintainer: Raymond G. Cavalcante <rcavalca at umich.edu>

Citation (from within R, enter citation("chipenrich.data")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("chipenrich.data")

Documentation

HTML R Script chipenrich.data
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Epigenetics, ExperimentData, FunctionalGenomics, GeneSetEnrichment, HistoneModification, Regression
Version 2.2.0
License GPL-3
Depends R (>= 3.4.0)
Imports AnnotationDbi, BiocGenerics, methods, GenomicRanges, GenomeInfoDb, IRanges, readr, rtracklayer, S4Vectors, utils
LinkingTo
Suggests BiocStyle, devtools, knitr, rmarkdown, roxygen2, testthat, GO.db, org.Dm.eg.db, org.Dr.eg.db, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, TxDb.Dmelanogaster.UCSC.dm3.ensGene, TxDb.Dmelanogaster.UCSC.dm6.ensGene, TxDb.Drerio.UCSC.danRer10.refGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Mmusculus.UCSC.mm9.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene, TxDb.Rnorvegicus.UCSC.rn4.ensGene, TxDb.Rnorvegicus.UCSC.rn5.refGene, TxDb.Rnorvegicus.UCSC.rn6.refGene
SystemRequirements
Enhances
URL
Depends On Me
Imports Me chipenrich
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chipenrich.data_2.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/chipenrich.data
Package Short Url http://bioconductor.org/packages/chipenrich.data/
Package Downloads Report Download Stats

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