treeio

DOI: 10.18129/B9.bioc.treeio    

Base Classes and Functions for Phylogenetic Tree Input and Output

Bioconductor version: Release (3.6)

Base classes and functions for parsing and exporting phylogenetic trees.

Author: Guangchuang Yu [aut, cre], Tommy Tsan-Yuk Lam [aut, ths], Casey Dunn [ctb], Bradley Jones [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

Documentation

HTML	R Script	Tree Data Input and Output
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, Software
Version	1.2.2
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	Artistic-2.0
Depends	R (>= 3.3.2)
Imports	ape, ggplot2, jsonlite, magrittr, methods, rvcheck
LinkingTo
Suggests	Biostrings, ggtree(>= 1.7.5), knitr, prettydoc, testthat
SystemRequirements
Enhances
URL	https://guangchuangyu.github.io/treeio
BugReports	https://github.com/GuangchuangYu/treeio/issues
Depends On Me	ggtree
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	treeio_1.2.2.tar.gz
Windows Binary	treeio_1.2.2.zip
Mac OS X 10.11 (El Capitan)	treeio_1.2.2.tgz
Source Repository	git clone https://git.bioconductor.org/packages/treeio
Package Short Url	http://bioconductor.org/packages/treeio/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive