groupClade {treeio}R Documentation

groupClade method

Description

group selected clade

Usage

groupClade(object, node, group_name = "group", ...)

## S4 method for signature 'beast'
groupClade(object, node, group_name = "group")

## S4 method for signature 'codeml'
groupClade(object, node, group_name = "group")

## S4 method for signature 'jplace'
groupClade(object, node, group_name = "group")

## S4 method for signature 'treedata'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phylip'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phylo'
groupClade(object, node, group_name = "group")

## S4 method for signature 'phangorn'
groupClade(object, node, group_name = "group")

Arguments

object

supported objects, including phylo, paml_rst, codeml_mlc, codeml, jplace, beast, hyphy

node

a internal node or a vector of internal nodes

group_name

name of the group, 'group' by default

...

additional parameter

Value

group index


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