get.tree {treeio} | R Documentation |
get.tree method
get.tree(object, ...) get.tree(object, ...) ## S4 method for signature 'codeml' get.tree(object, by = "rst", ...) ## S4 method for signature 'jplace' get.tree(object) ## S4 method for signature 'phylip' get.tree(object, ...) ## S4 method for signature 'phylo' get.tree(object, ...) ## S4 method for signature 'treedata' get.tree(object, ...) ## S4 method for signature 'hyphy' get.tree(object) ## S4 method for signature 'paml_rst' get.tree(object) ## S4 method for signature 'phangorn' get.tree(object, ...) ## S4 method for signature 'codeml_mlc' get.tree(object, ...) ## S4 method for signature 'r8s' get.tree(object, ...)
object |
one of |
... |
additional parameter |
by |
one of rst or mlc |
phylo object
Guangchuang Yu http://guangchuangyu.github.io
nwk <- system.file("extdata/HYPHY", "labelledtree.tree", package="treeio") ancseq <- system.file("extdata/HYPHY", "ancseq.nex", package="treeio") hy <- read.hyphy(nwk, ancseq) get.tree(hy)