hyphy-class {treeio} | R Documentation |
Class "hyphy" This class stores information of HYPHY output
fields
available features
treetext
tree text
phylo
phylo object
seq_type
one of "NT" and "AA"
subs
sequence substitutions
AA_subs
Amino acid sequence substitution
ancseq
ancestral sequences
tip_seq
tip sequences
tip.fasfile
fasta file of tip sequences
tree.file
tree file
ancseq.file
ancestral sequence file, nexus format
extraInfo
extra information
Guangchuang Yu http://guangchuangyu.github.io