groHMM

DOI: 10.18129/B9.bioc.groHMM    

GRO-seq Analysis Pipeline

Bioconductor version: Release (3.6)

A pipeline for the analysis of GRO-seq data.

Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus

Maintainer: Anusha Nagari <anusha.nagari at utsouthwestern.edu>, Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("groHMM")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("groHMM")

 

PDF	R Script	groHMM tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	Sequencing, Software
Version	1.12.0
In Bioconductor since	BioC 3.0 (R-3.1) (3.5 years)
License	GPL-3
Depends	R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.9.25), IRanges(>= 2.5.27), GenomeInfoDb, GenomicRanges(>= 1.23.16), GenomicAlignments, rtracklayer
Imports
LinkingTo
Suggests	BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene
SystemRequirements
Enhances
URL	https://github.com/Kraus-Lab/groHMM
BugReports	https://github.com/Kraus-Lab/groHMM/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	groHMM_1.12.0.tar.gz
Windows Binary	groHMM_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	groHMM_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/groHMM
Package Short Url	http://bioconductor.org/packages/groHMM/
Package Downloads Report	Download Stats