STRINGdb

DOI: 10.18129/B9.bioc.STRINGdb    

STRINGdb (Search Tool for the Retrieval of Interacting proteins database)

Bioconductor version: Release (3.6)

The STRINGdb package provides a R interface to the STRING protein-protein interactions database (http://www.string-db.org).

Author: Andrea Franceschini <andrea.franceschini at isb-sib.ch>

Maintainer: Damian Szklarczyk <damian.szklarczyk at imls.uzh.ch>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("STRINGdb")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("STRINGdb")

 

PDF	R Script	STRINGdb Vignette
PDF		Reference Manual

Details

biocViews	Network, Software
Version	1.18.0
In Bioconductor since	BioC 2.13 (R-3.0) (4.5 years)
License	GPL-2
Depends	R (>= 2.14.0)
Imports	png, sqldf, plyr, igraph, RCurl, methods, RColorBrewer, gplots, hash, plotrix
LinkingTo
Suggests	RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	PPInfer, scsR
Imports Me	coexnet, pwOmics, RITAN
Suggests Me	epiNEM, GeneNetworkBuilder, PCAN
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	STRINGdb_1.18.0.tar.gz
Windows Binary	STRINGdb_1.18.0.zip
Mac OS X 10.11 (El Capitan)	STRINGdb_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/STRINGdb
Package Short Url	http://bioconductor.org/packages/STRINGdb/
Package Downloads Report	Download Stats