PCAN

DOI: 10.18129/B9.bioc.PCAN    

Phenotype Consensus ANalysis (PCAN)

Bioconductor version: Release (3.6)

Phenotypes comparison based on a pathway consensus approach. Assess the relationship between candidate genes and a set of phenotypes based on additional genes related to the candidate (e.g. Pathways or network neighbors).

Author: Matthew Page and Patrice Godard

Maintainer: Matthew Page <matthew.page at ucb.com> and Patrice Godard <patrice.godard at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("PCAN")

Documentation

HTML	R Script	Assessing gene relevance for a set of phenotypes
PDF		Reference Manual

Details

biocViews	Annotation, FunctionalPrediction, Genetics, Network, Pathways, Sequencing, Software, VariantAnnotation
Version	1.6.0
In Bioconductor since	BioC 3.3 (R-3.3) (2 years)
License	CC BY-NC-ND 4.0
Depends	R (>= 3.3), BiocParallel
Imports	grDevices, stats
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, reactome.db, STRINGdb
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	PCAN_1.6.0.tar.gz
Windows Binary	PCAN_1.6.0.zip
Mac OS X 10.11 (El Capitan)	PCAN_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/PCAN
Package Short Url	http://bioconductor.org/packages/PCAN/
Package Downloads Report	Download Stats