RITAN

DOI: 10.18129/B9.bioc.RITAN    

Rapid Integration of Term Annotation and Network resources

Bioconductor version: Release (3.6)

Tools for comprehensive gene set enrichment and extraction of multi-resource high confidence subnetworks. RITAN facilitates bioinformatic tasks for enabling network biology research.

Author: Michael Zimmermann

Maintainer: Michael Zimmermann <zimmermann.michael at mayo.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RITAN")

Documentation

HTML	R Script	Enrichment Vignette
HTML	R Script	Enrichment Vignette
HTML	R Script	Enrichment Vignette
HTML	R Script	Enrichment Vignette
HTML	R Script	Network Biology Vignette
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalGenomics, GeneSetEnrichment, Network, NetworkEnrichment, NetworkInference, QualityControl, Software
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (1 year)
License	file LICENSE
Depends	R (>= 3.4), ProNet
Imports	graphics, stats, utils, grid, gridExtra, reshape2, gplots, ggplot2, plotrix, RColorBrewer, STRINGdb, MCL, linkcomm, dynamicTreeCut, sqldf, gsubfn, hash, png, sqldf, igraph, BgeeDB, knitr, RITANdata
LinkingTo
Suggests	rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RITAN_1.2.0.tar.gz
Windows Binary	RITAN_1.2.0.zip
Mac OS X 10.11 (El Capitan)	RITAN_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RITAN
Package Short Url	http://bioconductor.org/packages/RITAN/
Package Downloads Report	Download Stats