- Home
- Bioconductor 3.3
- Software Packages
- arrayQualityMetrics
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")
In most cases, you don't need to download the package archive at all.
arrayQualityMetrics
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see arrayQualityMetrics.
Quality metrics report for microarray data sets
Bioconductor version: 3.3
This package generates microarray quality metrics reports for data in Bioconductor microarray data containers (ExpressionSet, NChannelSet, AffyBatch). One and two color array platforms are supported.
Author: Audrey Kauffmann, Wolfgang Huber
Maintainer: Audrey Kauffmann <akauffmann.bioinfo at gmail.com>
Citation (from within R,
enter citation("arrayQualityMetrics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQualityMetrics")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("arrayQualityMetrics")
| R Script | Advanced topics: Customizing arrayQualityMetrics reports and programmatic processing of the output | |
| R Script | Introduction: microarray quality assessment with arrayQualityMetrics | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Microarray, OneChannel, QualityControl, ReportWriting, Software, TwoChannel |
| Version | 3.28.2 |
| In Bioconductor since | BioC 2.1 (R-2.6) (9 years) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | affy, affyPLM(>= 1.27.3), beadarray, Biobase, Cairo (>= 1.4-6), genefilter, graphics, grDevices, grid, gridSVG (>= 1.4-3), Hmisc, hwriter, lattice, latticeExtra, limma, methods, RColorBrewer, setRNG, stats, SVGAnnotation (>= 0.9-0), utils, vsn(>= 3.23.3), XML |
| LinkingTo | |
| Suggests | ALLMLL, CCl4, BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | EGAD |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | arrayQualityMetrics_3.28.2.tar.gz |
| Windows Binary | arrayQualityMetrics_3.28.2.zip |
| Mac OS X 10.9 (Mavericks) | arrayQualityMetrics_3.28.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/arrayQualityMetrics/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/arrayQualityMetrics/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
