To install this package, start R and enter:

## try http:// if https:// URLs are not supported

In most cases, you don't need to download the package archive at all.



This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see SummarizedExperiment.

SummarizedExperiment container

Bioconductor version: 3.3

The SummarizedExperiment container contains one or more assays, each represented by a matrix-like object of numeric or other mode. The rows typically represent genomic ranges of interest and the columns represent samples.

Author: Martin Morgan, Valerie Obenchain, Jim Hester, Hervé Pagès

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("SummarizedExperiment")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


HTML R Script SummarizedExperiment
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Coverage, Genetics, GenomeAnnotation, Infrastructure, Sequencing, Software
Version 1.2.3
In Bioconductor since BioC 3.2 (R-3.2) (1 year)
License Artistic-2.0
Depends R (>= 3.2), methods, GenomicRanges(>= 1.23.15), Biobase
Imports utils, stats, BiocGenerics(>= 0.15.3), S4Vectors(>= 0.9.36), IRanges(>= 2.5.26), GenomeInfoDb
Suggests annotate, AnnotationDbi, hgu95av2.db, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene, BiocStyle, knitr, rmarkdown, digest, jsonlite, rhdf5, airway
Depends On Me airway, ALDEx2, AllelicImbalance, BiSeq, bsseq, csaw, deepSNV, DESeq2, DEXSeq, DiffBind, diffHic, DREAM4, dsQTL, epigenomix, ExpressionAtlas, fission, GenoGAM, GenomicAlignments, GenomicFiles, genoset, geuvPack, InteractionSet, isomiRs, JunctionSeq, MBASED, methylPipe, minfi, parathyroidSE, RIPSeeker, SGSeq, simulatorZ, soGGi, VanillaICE, VariantAnnotation, yriMulti
Imports Me BBCAnalyzer, biovizBase, BiSeq, ChIPpeakAnno, CNPBayes, COSMIC.67, DChIPRep, debrowser, DEFormats, easyRNASeq, EnrichmentBrowser, ensemblVEP, epivizrData, erma, FourCSeq, GGBase, ggbio, gQTLBase, gQTLstats, GreyListChIP, gwascat, HTSeqGenie, IHWpaper, M3D, MafDb.ExAC.r0.3.sites, methyAnalysis, methylumi, MinimumDistance, MultiDataSet, oligoClasses, pcaExplorer, PureCN, R453Plus1Toolbox, regionReport, rgsepd, roar, SeqArray, SNPchip, SNPhood, systemPipeR, TCGAbiolinks, ToPASeq, VariantFiltering
Suggests Me AnnotationHub, biobroom, epivizr, GenomicRanges, globalSeq, HDF5Array, interactiveDisplay, RiboProfiling
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source SummarizedExperiment_1.2.3.tar.gz
Windows Binary
Mac OS X 10.9 (Mavericks) SummarizedExperiment_1.2.3.tgz
Subversion source (username/password: readonly)
Git source
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: