To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JunctionSeq")

In most cases, you don't need to download the package archive at all.

JunctionSeq

This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see JunctionSeq.

JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data

Bioconductor version: 3.3

A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.

Author: Stephen Hartley [aut, cre] (PhD), Simon Anders [cph], Alejandro Reyes [cph]

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R, enter citation("JunctionSeq")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("JunctionSeq")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("JunctionSeq")

biocViews	DifferentialExpression, RNASeq, Sequencing, Software
Version	1.2.4
In Bioconductor since	BioC 3.3 (R-3.3) (< 6 months)
License	file LICENSE
Depends	R (>= 3.3), methods, SummarizedExperiment(>= 0.2.0)
Imports	DESeq2(>= 1.10.0), statmod, Hmisc, plotrix, stringr, Biobase(>= 2.30.0), locfit, BiocGenerics(>= 0.7.5), BiocParallel, genefilter, geneplotter, S4Vectors, IRanges, GenomicRanges
LinkingTo
Suggests	MASS, knitr, JctSeqData, BiocStyle
SystemRequirements
Enhances	Cairo, pryr
URL	http://hartleys.github.io/JunctionSeq/index.html
BugReports	https://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me
Suggests Me	JctSeqData
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	JunctionSeq_1.2.4.tar.gz
Windows Binary	JunctionSeq_1.2.4.zip
Mac OS X 10.9 (Mavericks)	JunctionSeq_1.2.4.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/JunctionSeq/tree/release-3.3
Package Short Url	http://bioconductor.org/packages/JunctionSeq/
Package Downloads Report	Download Stats

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