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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ClassifyR")
In most cases, you don't need to download the package archive at all.
ClassifyR
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see ClassifyR.
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
Bioconductor version: 3.3
The software formalises a framework for classification in R. There are four stages; Data transformation, feature selection, classifier training, and prediction. The requirements of variable types and names are fixed, but specialised variables for functions can also be provided. The classification framework is wrapped in a driver loop, that reproducibly carries out a number of cross-validation schemes. Functions for differential expression, differential variability, and differential distribution are included. Additional functions may be developed by the user, by creating an interface to the framework.
Author: Dario Strbenac, John Ormerod, Graham Mann, Jean Yang
Maintainer: Dario Strbenac <dario.strbenac at sydney.edu.au>
Citation (from within R,
enter citation("ClassifyR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ClassifyR")
Documentation
| HTML | R Script | An Introduction to the ClassifyR Package |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Classification, Software, Survival |
| Version | 1.6.2 |
| In Bioconductor since | BioC 3.0 (R-3.1) (2 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.3), methods, Biobase, BiocParallel |
| Imports | locfit, ROCR, grid |
| LinkingTo | |
| Suggests | limma, edgeR, car, Rmixmod, ggplot2 (>= 2.0.0), gridExtra (>= 2.0.0), BiocStyle, pamr, sparsediscrim, PoiClaClu, curatedOvarianData, parathyroidSE, knitr, klaR, gtable, scales, e1071, rmarkdown, IRanges |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ClassifyR_1.6.2.tar.gz |
| Windows Binary | ClassifyR_1.6.2.zip |
| Mac OS X 10.9 (Mavericks) | ClassifyR_1.6.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ClassifyR/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/ClassifyR/ |
| Package Downloads Report | Download Stats |
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