alpineData

DOI: 10.18129/B9.bioc.alpineData  

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.17 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see alpineData.

Data for the alpine package vignette

Bioconductor version: 3.17

A small subset of paired-end RNA-seq reads from four samples of the GEUVADIS project.

Author: Michael Love

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alpineData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alpineData")

 

HTML	R Script	tximport
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentData, ExpressionData, RNASeqData, SequencingData
Version	1.26.0
License	GPL (>=2)
Depends	ExperimentHub, GenomicAlignments
Imports	utils, AnnotationHub
LinkingTo
Suggests	GenomicAlignments, knitr, markdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	alpine
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alpineData_1.26.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/alpineData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alpineData
Package Short Url	https://bioconductor.org/packages/alpineData/
Package Downloads Report	Download Stats