HCAData

DOI: 10.18129/B9.bioc.HCAData  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HCAData.

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Bioconductor version: 3.17

This package allows a direct access to the dataset generated by the Human Cell Atlas project for further processing in R and Bioconductor, in the comfortable format of SingleCellExperiment objects (available in other formats here: http://preview.data.humancellatlas.org/).

Author: Federico Marini [aut, cre]

Maintainer: Federico Marini <marinif at uni-mainz.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCAData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCAData")

 

HTML	R Script	Accessing the Human Cell Atlas datasets
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, RNASeqData, SingleCellData
Version	1.16.0
License	MIT + file LICENSE
Depends	R (>= 3.6), SingleCellExperiment
Imports	ExperimentHub, AnnotationHub, HDF5Array, utils
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, scran(>= 1.11.4), BiocSingular, scater, scuttle, Rtsne, igraph, iSEE, testthat
SystemRequirements
Enhances
URL	https://github.com/federicomarini/HCAData
Depends On Me	OSCA.workflows
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	HCAData_1.16.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/HCAData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/HCAData
Package Short Url	https://bioconductor.org/packages/HCAData/
Package Downloads Report	Download Stats