DOI: 10.18129/B9.bioc.ggtree  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ggtree.

an R package for visualization of tree and annotation data

Bioconductor version: 3.17

'ggtree' extends the 'ggplot2' plotting system which implemented the grammar of graphics. 'ggtree' is designed for visualization and annotation of phylogenetic trees and other tree-like structures with their annotation data.

Author: Guangchuang Yu [aut, cre, cph] , Tommy Tsan-Yuk Lam [aut, ths], Shuangbin Xu [aut] , Lin Li [ctb], Bradley Jones [ctb], Justin Silverman [ctb], Watal M. Iwasaki [ctb], Yonghe Xia [ctb], Ruizhu Huang [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at>

Citation (from within R, enter citation("ggtree")):


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biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, Phylogenetics, ReproducibleResearch, Software, Visualization
Version 3.8.2
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports ape, aplot, dplyr, ggplot2 (> 3.3.6), grid, magrittr, methods, purrr, rlang, ggfun (>= 0.0.9), yulab.utils, tidyr, tidytree (>= 0.3.9), treeio(>= 1.8.0), utils, scales, stats, cli
Suggests emojifont, ggimage, ggplotify, shadowtext, grDevices, knitr, prettydoc, rmarkdown, testthat, tibble, glue
Depends On Me ggtreeDendro, tanggle
Imports Me cardelino, cogeqc, enrichplot, ggmsa, ggtreeExtra, LinTInd, LymphoSeq, miaViz, microbiomeMarker, MicrobiotaProcess, orthogene, philr, scBubbletree, singleCellTK, sitePath, systemPipeTools, treekoR
Suggests Me compcodeR, syntenet, TreeAndLeaf, treeio, TreeSummarizedExperiment, universalmotif
Links To Me
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