TreeAndLeaf

DOI: 10.18129/B9.bioc.TreeAndLeaf  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TreeAndLeaf.

Displaying binary trees with focus on dendrogram leaves

Bioconductor version: 3.17

The TreeAndLeaf package combines unrooted and force-directed graph algorithms in order to layout binary trees, aiming to represent multiple layers of information onto dendrogram leaves.

Author: Leonardo W. Kume, Luis E. A. Rizzardi, Milena A. Cardoso, Mauro A. A. Castro

Maintainer: Milena A. Cardoso <milenandreuzo at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeAndLeaf")

 

HTML	R Script	TreeAndLeaf: an graph layout to dendrograms.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 3.11 (R-4.0) (3.5 years)
License	Artistic-2.0
Depends	R (>= 4.0)
Imports	RedeR(>= 1.40.4), igraph, ape
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, geneplast, ggtree, ggplot2, dplyr, dendextend, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RedeR
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TreeAndLeaf_1.12.0.tar.gz
Windows Binary	TreeAndLeaf_1.12.0.zip (64-bit only)
macOS Binary (x86_64)	TreeAndLeaf_1.12.0.tgz
macOS Binary (arm64)	TreeAndLeaf_1.12.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TreeAndLeaf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TreeAndLeaf
Bioc Package Browser	https://code.bioconductor.org/browse/TreeAndLeaf/
Package Short Url	https://bioconductor.org/packages/TreeAndLeaf/
Package Downloads Report	Download Stats