DOI: 10.18129/B9.bioc.tanggle  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see tanggle.

Visualization of Phylogenetic Networks

Bioconductor version: 3.17

Offers functions for plotting split (or implicit) networks (unrooted, undirected) and explicit networks (rooted, directed) with reticulations extending. 'ggtree' and using functions from 'ape' and 'phangorn'. It extends the 'ggtree' package [@Yu2017] to allow the visualization of phylogenetic networks using the 'ggplot2' syntax. It offers an alternative to the plot functions already available in 'ape' Paradis and Schliep (2019) and 'phangorn' Schliep (2011) .

Author: Klaus Schliep [aut, cre] , Marta Vidal-Garcia [aut], Claudia Solis-Lemus [aut] , Leann Biancani [aut], Eren Ada [aut], L. Francisco Henao Diaz [aut], Guangchuang Yu [ctb]

Maintainer: Klaus Schliep <klaus.schliep at gmail.com>

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HTML R Script ***tanggle***: Visualización de redes filogenéticas con *ggplot2*
HTML R Script ***tanggle***: Visualization of phylogenetic networks in a *ggplot2* framework
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biocViews Alignment, Clustering, DataImport, MultipleSequenceAlignment, Phylogenetics, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 3.14 (R-4.1) (2 years)
License Artistic-2.0
Depends R (>= 4.1), ggplot2 (>= 2.2.0), ggtree
Imports ape (>= 5.0), phangorn (>= 2.5), utils, methods
Suggests tinytest, BiocStyle, ggimage, knitr, rmarkdown
URL https://klausvigo.github.io/tanggle https://github.com/KlausVigo/tanggle
BugReports https://github.com/KlausVigo/tanggle/issues
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Source Package tanggle_1.6.0.tar.gz
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