RedeR

DOI: 10.18129/B9.bioc.RedeR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RedeR.

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.17

RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of nested networks.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RedeR")

 

HTML	R Script	RedeR: hierarchical networks
PDF		Reference Manual
Text		NEWS

Details

biocViews	GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology
Version	2.4.3
In Bioconductor since	BioC 2.9 (R-2.14) (12 years)
License	GPL (>= 3)
Depends	R (>= 4.0), methods
Imports	igraph
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, markdown, TreeAndLeaf
SystemRequirements	Java Runtime Environment (Java>= 11)
Enhances
URL	http://genomebiology.com/2012/13/4/R29
Depends On Me	Fletcher2013b
Imports Me	PANR, RTN, transcriptogramer, TreeAndLeaf
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RedeR_2.4.3.tar.gz
Windows Binary	RedeR_2.4.3.zip
macOS Binary (x86_64)	RedeR_2.4.3.tgz
macOS Binary (arm64)	RedeR_2.4.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RedeR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RedeR
Bioc Package Browser	https://code.bioconductor.org/browse/RedeR/
Package Short Url	https://bioconductor.org/packages/RedeR/
Package Downloads Report	Download Stats