ROTS

DOI: 10.18129/B9.bioc.ROTS  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ROTS.

Reproducibility-Optimized Test Statistic

Bioconductor version: 3.17

Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.

Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo

Maintainer: Tomi Suomi <tomi.suomi at utu.fi>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ROTS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ROTS")

 

PDF	R Script	ROTS: Reproducibility Optimized Test Statistic
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software
Version	1.28.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3)
Imports	Rcpp, stats, Biobase, methods
LinkingTo	Rcpp
Suggests	testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	PECA, RolDE
Suggests Me	wrProteo
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ROTS_1.28.0.tar.gz
Windows Binary	ROTS_1.28.0.zip
macOS Binary (x86_64)	ROTS_1.28.0.tgz
macOS Binary (arm64)	ROTS_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ROTS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ROTS
Bioc Package Browser	https://code.bioconductor.org/browse/ROTS/
Package Short Url	https://bioconductor.org/packages/ROTS/
Package Downloads Report	Download Stats