RolDE

DOI: 10.18129/B9.bioc.RolDE  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RolDE.

RolDE: Robust longitudinal Differential Expression

Bioconductor version: 3.17

RolDE detects longitudinal differential expression between two conditions in noisy high-troughput data. Suitable even for data with a moderate amount of missing values.RolDE is a composite method, consisting of three independent modules with different approaches to detecting longitudinal differential expression. The combination of these diverse modules allows RolDE to robustly detect varying differences in longitudinal trends and expression levels in diverse data types and experimental settings.

Author: Tommi Valikangas [cre, aut]

Maintainer: Tommi Valikangas <tsvali at utu.fi>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RolDE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RolDE")

 

HTML	R Script	Introduction
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, Proteomics, Regression, Software, StatisticalMethod, TimeCourse
Version	1.4.0
In Bioconductor since	BioC 3.15 (R-4.2) (1.5 years)
License	GPL-3
Depends	R (>= 4.2.0)
Imports	stats, methods, ROTS, matrixStats, foreach, parallel, doParallel, doRNG, rngtools, SummarizedExperiment, nlme, qvalue, grDevices, graphics, utils
LinkingTo
Suggests	knitr, printr, rmarkdown, testthat
SystemRequirements
Enhances
URL	https://github.com/elolab/RolDE
BugReports	https://github.com/elolab/RolDE/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RolDE_1.4.0.tar.gz
Windows Binary	RolDE_1.4.0.zip
macOS Binary (x86_64)	RolDE_1.4.0.tgz
macOS Binary (arm64)	RolDE_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RolDE
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RolDE
Bioc Package Browser	https://code.bioconductor.org/browse/RolDE/
Package Short Url	https://bioconductor.org/packages/RolDE/
Package Downloads Report	Download Stats