DOI: 10.18129/B9.bioc.AnVIL  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AnVIL.

Bioconductor on the AnVIL compute environment

Bioconductor version: 3.17

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The AnVIL package provides end-user and developer functionality. For the end-user, AnVIL provides fast binary package installation, utitlities for working with Terra / AnVIL table and data resources, and convenient functions for file movement to and from Google cloud storage. For developers, AnVIL provides programatic access to the Terra, Leonardo, Rawls, and Dockstore RESTful programming interface, including helper functions to transform JSON responses to formats more amenable to manipulation in R.

Author: Martin Morgan [aut, cre] , Kayla Interdonato [aut], Nitesh Turaga [aut], BJ Stubbs [ctb], Vincent Carey [ctb], Marcel Ramos [ctb], Sehyun Oh [ctb], Sweta Gopaulakrishnan [ctb], Valerie Obenchain [ctb]

Maintainer: Martin Morgan <mtmorgan.bioc at>

Citation (from within R, enter citation("AnVIL")):


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HTML R Script Dockstore and Bioconductor for AnVIL
HTML R Script Introduction to the AnVIL package
HTML R Script Running an AnVIL workflow within R
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, Software
Version 1.12.4
In Bioconductor since BioC 3.11 (R-4.0) (3.5 years)
License Artistic-2.0
Depends R (>= 3.6), dplyr
Imports stats, utils, methods, futile.logger, jsonlite, httr, rapiclient (>= 0.1.3), tibble, tidyselect, tidyr, rlang, shiny, DT, miniUI, htmltools, BiocManager
Suggests parallel, knitr, rmarkdown, testthat, withr, readr, BiocStyle, devtools
Depends On Me cBioPortalData, terraTCGAdata
Imports Me AnVILPublish, AnVILWorkflow
Suggests Me
Links To Me
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