AnVILWorkflow

DOI: 10.18129/B9.bioc.AnVILWorkflow  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see AnVILWorkflow.

Run workflows implemented in Terra/AnVIL workspace

Bioconductor version: 3.17

The AnVIL is a cloud computing resource developed in part by the National Human Genome Research Institute. The main cloud-based genomics platform deported by the AnVIL project is Terra. The AnVILWorkflow package allows remote access to Terra implemented workflows, enabling end-user to utilize Terra/ AnVIL provided resources - such as data, workflows, and flexible/scalble computing resources - through the conventional R functions.

Author: Sehyun Oh [aut, cre]

Maintainer: Sehyun Oh <shbrief at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("AnVILWorkflow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnVILWorkflow")

 

HTML	R Script	Quickstart: RNAseq analysis using salmon
PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Software
Version	1.0.1
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.2.0)
Imports	utils, AnVIL, httr, methods, jsonlite
LinkingTo
Suggests	knitr, tibble, BiocStyle
SystemRequirements
Enhances
URL
BugReports	https://github.com/shbrief/AnVILWorkflow/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AnVILWorkflow_1.0.1.tar.gz
Windows Binary	AnVILWorkflow_1.0.1.zip
macOS Binary (x86_64)	AnVILWorkflow_1.0.1.tgz
macOS Binary (arm64)	AnVILWorkflow_1.0.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/AnVILWorkflow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AnVILWorkflow
Bioc Package Browser	https://code.bioconductor.org/browse/AnVILWorkflow/
Package Short Url	https://bioconductor.org/packages/AnVILWorkflow/
Package Downloads Report	Download Stats