affydata

DOI: 10.18129/B9.bioc.affydata    

This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see affydata.

Affymetrix Data for Demonstration Purpose

Bioconductor version: 3.13

Example datasets of a slightly large size. They represent 'real world examples', unlike the artificial examples included in the package affy.

Author: Laurent Gautier <laurent at cbs.dtu.dk>

Maintainer: Harris Jaffee <hj at jhu.edu>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affydata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affydata")

 

PDF	R Script	affydata primer
PDF		Reference Manual

Details

biocViews	ExperimentData, MicroarrayData, Tissue, TissueMicroarrayData
Version	1.40.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 16.5 years)
License	GPL (>= 2)
Depends	R (>= 2.4.0), affy(>= 1.23.4)
Imports	methods
LinkingTo
Suggests	hgu95av2cdf, hgu133acdf
SystemRequirements
Enhances
URL
Depends On Me	affyContam
Imports Me
Suggests Me	affy, affycoretools, affyPara, affyPLM, affyQCReport, arrayMvout, ArrayTools, bgx, Biostrings, farms, gcrma, Harman, mimager, puma, pvac, RefPlus, RPA, sscore, TurboNorm, vsn, yaqcaffy
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affydata_1.40.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/affydata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affydata
Package Short Url	https://bioconductor.org/packages/affydata/
Package Downloads Report	Download Stats