affyQCReport

DOI: 10.18129/B9.bioc.affyQCReport    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see affyQCReport.

QC Report Generation for affyBatch objects

Bioconductor version: 3.13

This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.

Author: Craig Parman <craig.parman at bifx.org>, Conrad Halling <conrad.halling at bifx.org>, Robert Gentleman

Maintainer: Craig Parman <craig.parman at bifx.org>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("affyQCReport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Software
Version	1.70.0
In Bioconductor since	BioC 1.7 (R-2.2) (16 years)
License	LGPL (>= 2)
Depends	Biobase(>= 1.13.16), affy, lattice
Imports	affy, affyPLM, Biobase, genefilter, graphics, grDevices, lattice, RColorBrewer, simpleaffy, stats, utils, xtable
LinkingTo
Suggests	tkWidgets(>= 1.5.23), affydata(>= 1.4.1)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	BiocCaseStudies
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/affyQCReport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyQCReport
Package Short Url	https://bioconductor.org/packages/affyQCReport/
Package Downloads Report	Download Stats