yaqcaffy

DOI: 10.18129/B9.bioc.yaqcaffy    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yaqcaffy.

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 3.13

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yaqcaffy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, ReportWriting, Software
Version	1.52.0
In Bioconductor since	BioC 2.2 (R-2.7) (13.5 years)
License	Artistic-2.0
Depends	simpleaffy (>= 2.19.3), methods
Imports	stats4
LinkingTo
Suggests	MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/yaqcaffy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/yaqcaffy
Package Short Url	https://bioconductor.org/packages/yaqcaffy/
Package Downloads Report	Download Stats