DOI: 10.18129/B9.bioc.Pbase    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Pbase.

Manipulating and exploring protein and proteomics data

Bioconductor version: 3.10

A set of classes and functions to investigate and understand protein sequence data in the context of a proteomics experiment.

Author: Laurent Gatto [aut, cre], Johannes Rainer [aut], Sebastian Gibb [aut]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("Pbase")):


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biocViews DataImport, DataRepresentation, ImmunoOncology, Infrastructure, MassSpectrometry, Proteomics, Software, Visualization
Version 0.26.0
In Bioconductor since BioC 3.1 (R-3.2) (5 years)
License GPL-3
Depends R (>= 2.10), methods, BiocGenerics, Rcpp, Gviz
Imports cleaver(>= 1.3.6), Biobase, Biostrings(>= 2.47.5), IRanges(>= 2.13.11), S4Vectors(>= 0.17.24), mzID, mzR(>= 1.99.1), MSnbase(>= 1.15.5), Pviz, biomaRt, GenomicRanges(>= 1.31.7), rtracklayer(>= 1.39.6), ensembldb(>= 1.99.13), BiocParallel, AnnotationFilter
Suggests testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationHub, knitr, rmarkdown, BiocStyle, EnsDb.Hsapiens.v86(>= 2.0.0)
URL https://github.com/ComputationalProteomicsUnit/Pbase
BugReports https://github.com/ComputationalProteomicsUnit/Pbase/issues
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Source Package Pbase_0.26.0.tar.gz
Windows Binary Pbase_0.26.0.zip
Mac OS X 10.11 (El Capitan) Pbase_0.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Pbase
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Pbase
Package Short Url https://bioconductor.org/packages/Pbase/
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