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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("UniProt.ws")
In most cases, you don't need to download the package archive at all.
UniProt.ws
R Interface to UniProt Web Services
Bioconductor version: 3.0
A collection of functions for retrieving, processing and repackaging the Uniprot web services.
Author: Marc Carlson
Maintainer: Marc Carlson <mcarlson at fhcrc.org>
Citation (from within R,
enter citation("UniProt.ws")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("UniProt.ws")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UniProt.ws")
| R Script | UniProt.ws: A package for retrieving data from the UniProt web service | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 2.6.2 |
| In Bioconductor since | BioC 2.12 (R-3.0) |
| License | Artistic License 2.0 |
| Depends | RSQLite, RCurl, methods, utils |
| Imports | BiocGenerics, AnnotationDbi |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | cleaver, dagLogo |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | UniProt.ws_2.6.2.tar.gz |
| Windows Binary | UniProt.ws_2.6.2.zip |
| Mac OS X 10.6 (Snow Leopard) | UniProt.ws_2.6.2.tgz |
| Mac OS X 10.9 (Mavericks) | UniProt.ws_2.6.2.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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