To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOstats")

In most cases, you don't need to download the package archive at all.

GOstats

Tools for manipulating GO and microarrays.

Bioconductor version: 3.0

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GOstats")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GOstats")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOstats")

PDF		Hypergeometric tests for less common model organisms
PDF	R Script	Hypergeometric Tests Using GOstats
PDF	R Script	Visualizing Data Using GOstats
PDF		Reference Manual

Details

biocViews	Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version	2.32.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	Artistic-2.0
Depends	R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports	methods, stats, stats4, AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), AnnotationForge
LinkingTo
Suggests	hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me	attract, MineICA, RDAVIDWebService
Imports Me	affycoretools, attract, categoryCompare, facopy, mvGST, ProCoNA, ReportingTools, systemPipeR
Suggests Me	BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, MLP, MmPalateMiRNA, neaGUI, oneChannelGUI, phenoDist, qpgraph, safe
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GOstats_2.32.0.tar.gz
Windows Binary	GOstats_2.32.0.zip
Mac OS X 10.6 (Snow Leopard)	GOstats_2.32.0.tgz
Mac OS X 10.9 (Mavericks)	GOstats_2.32.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

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